PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA23G00087
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bZIP
Protein Properties Length: 316aa    MW: 35076.9 Da    PI: 6.1068
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA23G00087genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.32.1e-10142195558
                 CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                 kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l  ++     
  AA23G00087 142 KRAKRILANRQSAARSKERKARYIQELERKVQSLQTEATTLSAQLTLYQRDTNG 195
                 9*****************************************999888766655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-15138202IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.783140203IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.3E-10142196No hitNo description
SuperFamilySSF579591.76E-10142193No hitNo description
PfamPF001707.3E-9142198IPR004827Basic-leucine zipper domain
CDDcd147032.63E-23143192No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MENSDPPSNP VDSRPDPNPN HSPMPSTFHR RSRSDDMSMF MFMDPLSGAP PSSDDLPSDD  60
DLFSAFIDVD SLSSNPNLPF SFPNSSTGNS VPPPSSSATS RPRHRHSNSV DAGCAMYAGE  120
IMDAKKAMPP EKLAELWNID PKRAKRILAN RQSAARSKER KARYIQELER KVQSLQTEAT  180
TLSAQLTLYQ RDTNGLATEN TELKLRLQAM EQQAHLRNAL NEALRKEVER MKMETGEISN  240
HSDSFDLGMQ QRFMPIPPYH GFNQNQPIQM SNSQSVSDFI QNGRMQGLEI SSHSNSSTLV  300
KSEGPSLSAS ESSSGY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00129DAPTransfer from AT1G06850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4198521e-144AJ419852.1 Arabidopsis thaliana mRNA for AtbZIP transcription factor.
GenBankAY0624741e-144AY062474.1 Arabidopsis thaliana Similar to bZIP transcription factors (At1g06850; F4H5.7) mRNA, complete cds.
GenBankBT0001021e-144BT000102.1 Arabidopsis thaliana Similar to bZIP transcription factors (At1g06850) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013657521.11e-150PREDICTED: transcription factor RF2b-like
RefseqXP_009110972.11e-150PREDICTED: transcription factor RF2b-like
SwissprotQ6S4P43e-80RF2B_ORYSJ; Transcription factor RF2b
TrEMBLA0A078FME01e-150A0A078FME0_BRANA; BnaA08g28740D protein
TrEMBLM4EPE31e-150M4EPE3_BRARP; Uncharacterized protein
STRINGBra030663.1-P1e-149(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135551727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06850.11e-121basic leucine-zipper 52